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linting fix

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This commit is contained in:
Saifeddine ALOUI
2025-01-22 00:40:39 +01:00
parent f5fd8d5eac
commit 6db8b5bf79
1 changed files with 146 additions and 139 deletions
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119
extra/VisualizationTOol/GraphVisualizer.py
View File

@@ -8,6 +8,7 @@ Version: 2.2
from pathlib import Path
from typing import Optional, Tuple, Dict, List, Any
import pipmaster as pm
# Install all required dependencies
REQUIRED_PACKAGES = [
"PyQt5",
@@ -18,10 +19,9 @@ REQUIRED_PACKAGES = [
"networkx",
"matplotlib",
"python-louvain",
"ascii_colors"
"ascii_colors",
]
from ascii_colors import ASCIIColors, trace_exception
def setup_dependencies():
"""
@@ -32,6 +32,7 @@ def setup_dependencies():
print(f"Installing {package}...")
pm.install(package)
# Install dependencies
setup_dependencies()
@@ -40,18 +41,32 @@ import numpy as np
import matplotlib.pyplot as plt
import community
from PyQt5.QtWidgets import (
QApplication, QMainWindow, QWidget, QVBoxLayout,
QHBoxLayout, QPushButton, QFileDialog, QLabel,
QMessageBox, QSpinBox, QComboBox, QCheckBox,
QTableWidget, QTableWidgetItem, QSplitter, QDockWidget,
QTextEdit
QApplication,
QMainWindow,
QWidget,
QVBoxLayout,
QHBoxLayout,
QPushButton,
QFileDialog,
QLabel,
QMessageBox,
QSpinBox,
QComboBox,
QCheckBox,
QTableWidget,
QTableWidgetItem,
QSplitter,
QDockWidget,
QTextEdit,
)
from PyQt5.QtCore import Qt
import pyqtgraph.opengl as gl
from ascii_colors import trace_exception
class Point:
"""Simple point class to handle coordinates"""
def __init__(self, x: float, y: float):
self.x = x
self.y = y
@@ -59,6 +74,7 @@ class Point:
class NodeState:
"""Data class for node visual state"""
NORMAL_SCALE = 1.0
HOVER_SCALE = 1.2
SELECTED_SCALE = 1.3
@@ -76,8 +92,15 @@ class NodeState:
class Node3D:
"""Class representing a 3D node in the graph"""
def __init__(self, position: np.ndarray, color: Tuple[float, float, float, float],
label: str, node_type: str, size: float):
def __init__(
self,
position: np.ndarray,
color: Tuple[float, float, float, float],
label: str,
node_type: str,
size: float,
):
self.position = position
self.base_color = color
self.color = color
@@ -119,12 +142,13 @@ class Node3D:
"""Update node visual appearance"""
if self.mesh_item:
self.mesh_item.setData(
color=np.array([self.color]),
size=np.array([self.size * scale * 5])
color=np.array([self.color]), size=np.array([self.size * scale * 5])
)
class NodeDetailsWidget(QWidget):
"""Widget to display node details"""
def __init__(self, parent=None):
super().__init__(parent)
self.init_ui()
@@ -161,13 +185,14 @@ class NodeDetailsWidget(QWidget):
for idx, (neighbor, edge_data) in enumerate(connections.items()):
self.connections.setItem(idx, 0, QTableWidgetItem(str(neighbor)))
self.connections.setItem(
idx, 1,
QTableWidgetItem(edge_data.get('relationship', 'unknown'))
idx, 1, QTableWidgetItem(edge_data.get("relationship", "unknown"))
)
self.connections.setItem(idx, 2, QTableWidgetItem("outgoing"))
class GraphMLViewer3D(QMainWindow):
"""Main window class for 3D GraphML visualization"""
def __init__(self):
super().__init__()
@@ -186,7 +211,6 @@ class GraphMLViewer3D(QMainWindow):
self.elevation = 30 # Initial camera elevation
self.azimuth = 45 # Initial camera azimuth
self.init_ui()
def init_ui(self):
@@ -233,9 +257,7 @@ class GraphMLViewer3D(QMainWindow):
# Set initial camera position
self.view.setCameraPosition(
distance=self.distance,
elevation=self.elevation,
azimuth=self.azimuth
distance=self.distance, elevation=self.elevation, azimuth=self.azimuth
)
# Connect all mouse events
@@ -268,7 +290,6 @@ class GraphMLViewer3D(QMainWindow):
return sizes
def create_toolbar(self, layout: QVBoxLayout):
"""Create the toolbar with controls"""
toolbar = QHBoxLayout()
@@ -310,8 +331,6 @@ class GraphMLViewer3D(QMainWindow):
reset_btn.clicked.connect(self.reset_view) # Use the new reset_view method
toolbar.addWidget(reset_btn)
def load_graphml(self) -> None:
"""Load and visualize a GraphML file"""
try:
@@ -338,11 +357,7 @@ class GraphMLViewer3D(QMainWindow):
if layout_type == "spring":
pos = nx.spring_layout(
self.graph,
dim=3,
k=2.0,
iterations=100,
weight=None
self.graph, dim=3, k=2.0, iterations=100, weight=None
)
elif layout_type == "circular":
pos_2d = nx.circular_layout(self.graph)
@@ -365,13 +380,12 @@ class GraphMLViewer3D(QMainWindow):
def get_node_color(self, node_id: str) -> Tuple[float, float, float, float]:
"""Get RGBA color based on community"""
if hasattr(self, 'communities') and node_id in self.communities:
if hasattr(self, "communities") and node_id in self.communities:
comm_id = self.communities[node_id]
color = self.community_colors[comm_id]
return tuple(color)
return (0.5, 0.5, 0.5, 0.8)
def create_node(self, node_id: str, position: np.ndarray, node_type: str) -> Node3D:
"""Create a 3D node with interaction capabilities"""
color = self.get_node_color(node_id)
@@ -386,11 +400,11 @@ class GraphMLViewer3D(QMainWindow):
pos=np.array([position]),
size=np.array([size * 8]),
color=np.array([color]),
pxMode=False
pxMode=False,
)
# Enable picking and set node ID
node.mesh_item.setGLOptions('translucent')
node.mesh_item.setGLOptions("translucent")
node.mesh_item.node_id = node_id
if self.show_labels.isChecked():
@@ -402,9 +416,6 @@ class GraphMLViewer3D(QMainWindow):
return node
def mapToView(self, pos) -> Point:
"""Convert screen coordinates to world coordinates"""
# Get the viewport size
@@ -451,9 +462,7 @@ class GraphMLViewer3D(QMainWindow):
self.elevation = np.clip(self.elevation, -89, 89)
self.view.setCameraPosition(
distance=self.distance,
elevation=self.elevation,
azimuth=self.azimuth
distance=self.distance, elevation=self.elevation, azimuth=self.azimuth
)
# Handle hover events when no buttons are pressed
@@ -462,14 +471,14 @@ class GraphMLViewer3D(QMainWindow):
mouse_pos = self.mapToView(pos)
# Check for hover
min_dist = float('inf')
min_dist = float("inf")
hovered_node = None
for node_id, node in self.nodes.items():
# Calculate distance to mouse in world coordinates
dx = mouse_pos.x - node.position[0]
dy = mouse_pos.y - node.position[1]
dist = np.sqrt(dx*dx + dy*dy)
dist = np.sqrt(dx * dx + dy * dy)
if dist < min_dist and dist < 0.5: # Adjust threshold as needed
min_dist = dist
@@ -496,13 +505,13 @@ class GraphMLViewer3D(QMainWindow):
mouse_pos = self.mapToView(pos)
# Find closest node
min_dist = float('inf')
min_dist = float("inf")
clicked_node = None
for node_id, node in self.nodes.items():
dx = mouse_pos.x - node.position[0]
dy = mouse_pos.y - node.position[1]
dist = np.sqrt(dx*dx + dy*dy)
dist = np.sqrt(dx * dx + dy * dy)
if dist < min_dist and dist < 0.5: # Adjust threshold as needed
min_dist = dist
@@ -518,15 +527,14 @@ class GraphMLViewer3D(QMainWindow):
if self.graph:
self.details.update_node_info(
self.graph.nodes[clicked_node],
self.graph[clicked_node]
self.graph.nodes[clicked_node], self.graph[clicked_node]
)
def on_mouse_release(self, event):
"""Handle mouse release events"""
self.mouse_buttons_pressed.discard(event.button())
self.mouse_pos_last = None
def on_mouse_wheel(self, event):
"""Handle mouse wheel for zooming"""
delta = event.angleDelta().y()
@@ -539,9 +547,7 @@ class GraphMLViewer3D(QMainWindow):
self.distance = np.clip(self.distance, 1.0, 100.0)
self.view.setCameraPosition(
distance=self.distance,
elevation=self.elevation,
azimuth=self.azimuth
distance=self.distance, elevation=self.elevation, azimuth=self.azimuth
)
def reset_view(self):
@@ -552,14 +558,14 @@ class GraphMLViewer3D(QMainWindow):
self.center = np.array([0, 0, 0])
self.view.setCameraPosition(
distance=self.distance,
elevation=self.elevation,
azimuth=self.azimuth
distance=self.distance, elevation=self.elevation, azimuth=self.azimuth
)
def create_edge(self, start_pos: np.ndarray, end_pos: np.ndarray,
color: Tuple[float, float, float, float] = (0.3, 0.3, 0.3, 0.2)
def create_edge(
self,
start_pos: np.ndarray,
end_pos: np.ndarray,
color: Tuple[float, float, float, float] = (0.3, 0.3, 0.3, 0.2),
) -> gl.GLLinePlotItem:
"""Create a 3D edge between nodes"""
return gl.GLLinePlotItem(
@@ -567,7 +573,7 @@ class GraphMLViewer3D(QMainWindow):
color=color,
width=1,
antialias=True,
mode='lines'
mode="lines",
)
def handle_node_hover(self, event: Any, node_id: str) -> None:
@@ -595,8 +601,7 @@ class GraphMLViewer3D(QMainWindow):
if self.graph:
self.details.update_node_info(
self.graph.nodes[node_id],
self.graph[node_id]
self.graph.nodes[node_id], self.graph[node_id]
)
def refresh_layout(self) -> None:
@@ -620,7 +625,7 @@ class GraphMLViewer3D(QMainWindow):
positions = self.calculate_layout()
for node_id in self.graph.nodes():
node_type = self.graph.nodes[node_id].get('type', 'default')
node_type = self.graph.nodes[node_id].get("type", "default")
node = self.create_node(node_id, positions[node_id], node_type)
self.view.addItem(node.mesh_item)
@@ -636,7 +641,7 @@ class GraphMLViewer3D(QMainWindow):
if self.show_labels.isChecked():
mid_point = (positions[source] + positions[target]) / 2
relationship = self.graph.edges[source, target].get('relationship', '')
relationship = self.graph.edges[source, target].get("relationship", "")
if relationship:
label = gl.GLTextItem(
pos=mid_point,
@@ -646,6 +651,7 @@ class GraphMLViewer3D(QMainWindow):
self.view.addItem(label)
self.edge_labels.append(label)
def main():
"""Application entry point"""
import sys
@@ -655,5 +661,6 @@ def main():
viewer.show()
sys.exit(app.exec_())
if __name__ == "__main__":
main()